PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01876g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 342aa    MW: 38430.7 Da    PI: 10.2274
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01876g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.91.8e-22281333259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                D+y+WrKYGqK++kgs++p      +++gCp++k+ver+ edp+++++ YegeHnh+
  Niben101Scf01876g00009.1 281 ADEYSWRKYGQKPIKGSPHPS-----SMRGCPARKHVERCLEDPSMLIVSYEGEHNHP 333
                               69******************7.....589****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.4E-18233278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-24268334IPR003657WRKY domain
PROSITE profilePS5081122.779275335IPR003657WRKY domain
SuperFamilySSF1182901.44E-19278334IPR003657WRKY domain
SMARTSM007745.9E-28280334IPR003657WRKY domain
PfamPF031066.0E-18282333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEEIEEANKV AIENCHRVIS LLSKPQDQNQ YGNLLVRETG EAVRKFKKVI TLLNTTLGHA  60
RVRKVNKFKT HLPHNILVEN PSCKINDQQK HLRLLPIDSR ENRVLEMGSN VKCSLTLGSP  120
SLELSSNSRN PLNFGQQTPL PNYNYLQQQQ QQQQRRFLLQ QQQLKQPAEM MYRQSNSGIS  180
LNFDSSTCTP TMSSTRSFIS SLSVDGSVAN LDGSSFHLIG ASRSADLTLF QQKRRCSARG  240
DEGSVKCGSS GRCHCSKKRK HRVKRSIKVP AISNKLADIP ADEYSWRKYG QKPIKGSPHP  300
SSMRGCPARK HVERCLEDPS MLIVSYEGEH NHPTLPSQSA NA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-152763361075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774253.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-111WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A1U7W6L20.0A0A1U7W6L2_NICSY; probable WRKY transcription factor 21
STRINGXP_009774253.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-112WRKY DNA-binding protein 21