PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01887g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 260aa    MW: 29874.7 Da    PI: 4.7734
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01887g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.69.9e-2361246128
                       NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                               +F+P+d el+ + L k ++gk l++e  i   d+y+ ePw+L      ++k  yf ++ +kk++t+ r nr+t +g W ++ k k
  Niben101Scf01887g00004.1   6 QFRPSDTELILQ-LLKFLAGKCLPTEGLIGFEDVYSKEPWQLI---GDTKKTKYFLTQLKKKKPTDARFNRTTCNGSWTQQNKGK 86 
                               6*********88.556788999999899**************6...4456788******************************** PP

                       NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               e++++ ++  +g k++L +  +r+ ++ + +W+m ey l
  Niben101Scf01887g00004.1  87 EIVDEdENLIIGYKRSLSYK-NRKDSSLSGRWLMMEYFL 124
                               ****8444559*******97.7888889*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.2761148IPR003441NAC domain
PfamPF023655.2E-116123IPR003441NAC domain
SuperFamilySSF1019411.57E-226147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MENNGQFRPS DTELILQLLK FLAGKCLPTE GLIGFEDVYS KEPWQLIGDT KKTKYFLTQL  60
KKKKPTDARF NRTTCNGSWT QQNKGKEIVD EDENLIIGYK RSLSYKNRKD SSLSGRWLMM  120
EYFLADSLLQ QLKSNEAKEF VICAIKKNPR SELRGNSIAT VVEYKRFIDR VLQEPSHQST  180
MIFSNNNPMM VESTSSDAFS VEQLESKDGM LVQTDSDGFF GMLNVENQEC YYHEGDEVEV  240
DWDSLLDFGG RGLVQSDLLY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238036.11e-175PREDICTED: uncharacterized protein LOC109218154
TrEMBLA0A1J6KJL41e-174A0A1J6KJL4_NICAT; Nac domain-containing protein 41
STRINGXP_009628603.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9815725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-16NAC domain containing protein 83