PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01894g03001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 195aa MW: 22344.8 Da PI: 4.6953

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01894g03001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.5	3.1e-37	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF Ptdeelvv++L++k+ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r + +r+t +gyWk+ Niben101Scf01894g03001.1 8 LPPGFRFYPTDEELVVHFLHRKAGLLPCHP-DVIPDLDLYPYDPWDLDGKAMAEGNKWYFYSRRTQ--------SRITGNGYWKS 83 79***********************999.99**********977778899**9854........799**** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g d++++s+ + ++vg+kk ++fy g+ p+g+kt+Wvm+e++l Niben101Scf01894g03001.1 84 LGLDEPIFSRsSCNKVGIKKYFAFYIGEPPEGVKTNWVMQEFSL 127 *****966678*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-47	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	45.037	8	163	IPR003441	NAC domain
Pfam	PF02365	3.2E-21	9	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA GLLPCHPDVI PDLDLYPYDP WDLDGKAMAE 60 GNKWYFYSRR TQSRITGNGY WKSLGLDEPI FSRSSCNKVG IKKYFAFYIG EPPEGVKTNW 120 VMQEFSLSDS SSSSSGTSRS SSRRRSFSKI DYSKWVICRV QERNCDNDDD DGTELSCLDE 180 VFLSLDDLDE ISLPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-38	4	164	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-38	4	164	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-38	4	164	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-38	4	164	13	166	NO APICAL MERISTEM PROTEIN
4dul_A	1e-38	4	164	13	166	NAC domain-containing protein 19
4dul_B	1e-38	4	164	13	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762857.1	1e-120	PREDICTED: NAC transcription factor 25 isoform X1
Refseq	XP_016458989.1	1e-120	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	4e-90	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A1S3Z3I7	1e-119	A0A1S3Z3I7_TOBAC; NAC domain-containing protein 104-like
TrEMBL	A0A1U7V3R3	1e-119	A0A1U7V3R3_NICSY; NAC transcription factor 25 isoform X1
STRING	XP_009762857.1	1e-120	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-76	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]