PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01903g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 128aa MW: 14451.4 Da PI: 10.545

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01903g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	52.2	2.3e-16	60	95	2	37
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqd 37 a+k+++++++hTkv+gR+RR+R++a+ca r+F+L+ Niben101Scf01903g00004.1 60 APKRSSNKDRHTKVEGRGRRIRMPALCATRIFQLTL 95 789*******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.0E-12	65	94	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MDPKGSKQPQ EEISNFLSHP NPKNINTNIS SNMGENNLVE INDFQIENSD KDETKKQQLA 60 PKRSSNKDRH TKVEGRGRRI RMPALCATRI FQLTLMGCSV NIFVLKLGVI RFLKNQGTRQ 120 SDGLNNGI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757309.1	2e-55	PREDICTED: transcription factor TCP20 isoform X1
Refseq	XP_009757310.1	2e-55	PREDICTED: transcription factor TCP20 isoform X2
TrEMBL	A0A1U7V4Z9	4e-54	A0A1U7V4Z9_NICSY; transcription factor TCP20 isoform X1
TrEMBL	A0A1U7V6F6	3e-54	A0A1U7V6F6_NICSY; transcription factor TCP20 isoform X2
STRING	XP_009757309.1	7e-55	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-23	TCP family protein