PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01903g02006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 201aa MW: 22747.8 Da PI: 7.4638

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01903g02006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.9	5.9e-16	30	76	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRRdriN ++++Lr+l+P++ +K++Ka+ L+ +ve++k+L Niben101Scf01903g02006.1 30 RSHSEAEKRRRDRINAKLSTLRKLIPSS-----EKMDKAALLRSVVEHVKDL 76 78***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.641	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-13	30	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.52E-12	30	77	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-16	30	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.1E-14	30	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-14	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.6E-6	115	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MMDNSEYWPE TETETDFQQF EENTSASGSR SHSEAEKRRR DRINAKLSTL RKLIPSSEKM 60 DKAALLRSVV EHVKDLKGRA KEISKVVNTP TDIDEVIIEH LDEDENSSNS IILKVCVCCD 120 DRPELLSEVN RALNNLKLTT EEANITSLGG RIKCVFVLKS LNGVCLNSLK HSLTRIAISP 180 STSNYPIKSK RHRFFLPPNF S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019224939.1	1e-129	PREDICTED: transcription factor bHLH51 isoform X2
TrEMBL	A0A1S3ZS51	1e-124	A0A1S3ZS51_TOBAC; transcription factor bHLH51-like
TrEMBL	A0A1U7XDC1	1e-124	A0A1U7XDC1_NICSY; transcription factor bHLH51
STRING	XP_009787651.1	1e-125	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5820	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-43	bHLH family protein