PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01917g11015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 232aa MW: 24515.4 Da PI: 8.1133

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01917g11015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120	2.9e-37	31	124	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++as++ s s +s++s Niben101Scf01917g11015.1 31 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIVAATGTGTIPASFStL--SVSLRNSSPS 113 79******************************************************************88743..4444444445 PP TCP 87 sg........k 89 ++ + Niben101Scf01917g11015.1 114 ISpapfllgkR 124 54445555541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.303	36	90	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.0E-34	36	134	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSTSVEANGA TLCSHPQQHS SDACNNGALV VKKPPAKDRH SKVDGRGRRI RMPIVCAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIVAA TGTGTIPASF STLSVSLRNS SPSISPAPFL 120 LGKRLRPEDD DGSGEKDDAS NGATVVGPTP GFWAVPARPD FGQVWSFTPP PPPDMVAPTH 180 SSAARFLQQQ MGEESAARLG NYFPIAQGHL NLLASLSGSA PPSSGRRDDD GN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019233152.1	1e-149	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	2e-79	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1J6JAK1	1e-147	A0A1J6JAK1_NICAT; Transcription factor tcp7
STRING	XP_009760508.1	1e-134	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-74	TCP family protein