PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01926g06008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 92aa    MW: 10465.7 Da    PI: 4.6122
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01926g06008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-102668145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                              ++ +++eE+ l+++ +++ G++ W++Ia +++ gRt +++  + +
  Niben101Scf01926g06008.1 26 KLEFSEEEEMLIAKMFNLVGKR-WSLIAGRIP-GRTSEEIEKYCN 68
                              678*******************.*********.******988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.042171IPR017877Myb-like domain
SMARTSM007172.9E-72573IPR001005SANT/Myb domain
PfamPF002493.0E-92768IPR001005SANT/Myb domain
SuperFamilySSF466897.33E-82769IPR009057Homeodomain-like
CDDcd001672.97E-72868No hitNo description
Gene3DG3DSA:1.10.10.601.0E-112869IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MADELSSTSE NTFVVSAETT TEETSKLEFS EEEEMLIAKM FNLVGKRWSL IAGRIPGRTS  60
EEIEKYCNSR YVIHKPASST KEETRKLENN LS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768246.16e-56PREDICTED: transcription factor CPC-like
RefseqXP_016486068.16e-56PREDICTED: transcription factor CPC-like
TrEMBLA0A1S4BB721e-54A0A1S4BB72_TOBAC; transcription factor CPC-like
TrEMBLA0A1U7VTI21e-54A0A1U7VTI2_NICSY; transcription factor CPC-like
STRINGXP_009768246.12e-55(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65791932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.15e-13MYB_related family protein