PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01942g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 238aa    MW: 27512.2 Da    PI: 7.7442
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01942g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.83.3e-11135158124
                               ---SS-EEEEEEE--TT-SS-EEE CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsY 24 
                               ldDgy+WrKYG+K+vk++++pr Y
  Niben101Scf01942g04001.1 135 LDDGYKWRKYGKKKVKSNTNPREY 158
                               59*********************9 PP
2WRKY52.78.6e-171682101759
                               T-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY  17 gsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               g++  r+YY+C+s gC+vkkkver+  d +++++tYeg+Hnhe
  Niben101Scf01942g04001.1 168 GNRLNRNYYKCSSGGCKVKKKVERDGIDSSYLITTYEGKHNHE 210
                               78899*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-27121212IPR003657WRKY domain
SuperFamilySSF1182907.85E-9128158IPR003657WRKY domain
PROSITE profilePS5081124.845130212IPR003657WRKY domain
SMARTSM007744.9E-27135211IPR003657WRKY domain
PfamPF031061.3E-6136158IPR003657WRKY domain
PfamPF031063.8E-12168210IPR003657WRKY domain
SuperFamilySSF1182902.75E-13168212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFGSSTFQET INISHQTINP NFAFSPLINM NQDHGRNMYQ DFDTSFIDQL INDGEEYSNS  60
NNSFNSTSLY SQNYPFMQQE ISTSTYSGNS SASSFDATPT NIHMNENSSN NGIEKEKKAE  120
KHAIAFRTKT ELETLDDGYK WRKYGKKKVK SNTNPREYNI RNALTKWGNR LNRNYYKCSS  180
GGCKVKKKVE RDGIDSSYLI TTYEGKHNHE SPFIIHFHEK PTVSFHNDQW TLQADSLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-19127212977Probable WRKY transcription factor 4
2lex_A1e-19127212977Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804801.11e-160PREDICTED: probable WRKY transcription factor 51 isoform X1
RefseqXP_016487858.11e-160PREDICTED: probable WRKY transcription factor 51 isoform X1
TrEMBLA0A1S4BG641e-159A0A1S4BG64_TOBAC; probable WRKY transcription factor 51 isoform X1
TrEMBLA0A1U7YS781e-159A0A1U7YS78_NICSY; probable WRKY transcription factor 51 isoform X1
STRINGXP_009804801.11e-160(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134941217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.19e-10WRKY DNA-binding protein 51