PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01956g12014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 148aa    MW: 17067.1 Da    PI: 10.0156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01956g12014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39e-192677256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +y+GVr+++ +g+++AeIrdp+ +g  +r +lg+f tae+Aa+a+++ + +l+g+
  Niben101Scf01956g12014.1 26 KYRGVRRRP-WGKFAAEIRDPTRQG--ARQWLGTFETAEDAARAYDKTAFNLRGH 77
                              8********.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-312686IPR001471AP2/ERF domain
PfamPF008471.4E-122677IPR001471AP2/ERF domain
CDDcd000188.44E-292685No hitNo description
PROSITE profilePS5103223.7882684IPR001471AP2/ERF domain
SMARTSM003803.0E-342690IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-222685IPR016177DNA-binding domain
PRINTSPR003679.5E-112738IPR001471AP2/ERF domain
PRINTSPR003679.5E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MEGSSSKGKK VMQEKESGNK GKEEIKYRGV RRRPWGKFAA EIRDPTRQGA RQWLGTFETA  60
EDAARAYDKT AFNLRGHLAT LNFPNEYYSQ LSNPPYHYRT TSFNIINPIR RGLEKESSPI  120
GNQDKEIIEF EYLDDTRFVP TNAITSKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-28211369113Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495179.14e-91PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1J6KW573e-92A0A1J6KW57_NICAT; Ethylene-responsive transcription factor erf098
STRINGXP_009590142.12e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-41ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]