PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01956g12018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 151aa    MW: 16989.1 Da    PI: 5.9433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01956g12018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-1773120353
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                               y+GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+   
  Niben101Scf01956g12018.1  73 YRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFLT 120
                               9*******.**********44465..*********************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-2972131IPR001471AP2/ERF domain
PROSITE profilePS5103222.58972130IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-2272132IPR016177DNA-binding domain
CDDcd000181.93E-1872131No hitNo description
SMARTSM003801.3E-3472136IPR001471AP2/ERF domain
PfamPF008477.0E-1272118IPR001471AP2/ERF domain
PRINTSPR003672.6E-107384IPR001471AP2/ERF domain
PRINTSPR003672.6E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MNSSSLNLLY HLNFNTFSLP FNVNDSDEML LYGLLAQETT SRDGSRVVAA GSRNSNNYED  60
SISEPKPLKE RIYRGVRRRP WGKFAAEIRD STRNGIRVWL GTFDSAEAAA LAYDQAAFLT  120
RGSGAILNFP VERVVESLNG MKCYVEEAYF M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2769131264ATERF1
3gcc_A4e-2769131264ATERF1
5wx9_A5e-27731321574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769380.12e-82PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_019256547.12e-82PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_019262776.12e-82PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y97e-48ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1J6INJ03e-81A0A1J6INJ0_NICAT; Ethylene-responsive transcription factor 1b
TrEMBLA0A1U7W5324e-81A0A1U7W532_NICSY; ethylene-responsive transcription factor 1B-like
STRINGXP_009769380.16e-82(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-38ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]