PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01958g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 159aa    MW: 18047.2 Da    PI: 7.3454
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01958g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS175.63.8e-5415159229374
                      GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                               +lvkslsPk+v++veqe+++n++ F+ rf e+l+yy+a+f+s++a+ pr++++ri+ E+++++r++vn++acega+r+erhe ++
  Niben101Scf01958g00001.1  15 RLVKSLSPKIVTLVEQESNTNTAAFVPRFRETLDYYTAMFESIDAGRPRDDKQRISAEEHCMARDVVNIIACEGADRVERHELFG 99 
                               78*********************************************************************************** PP

                      GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               kW++rl++aGF+p pls ++ + ++ +l+ ++s+ yr+ e++g+l+lgWk+r+L ++SaWr
  Niben101Scf01958g00001.1 100 KWSMRLKMAGFTPCPLSPSVGEAINDMLKDYSSN-YRIAESKGALYLGWKNRALATTSAWR 159
                               ********************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.5071140IPR005202Transcription factor GRAS
PfamPF035141.3E-5115159IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MFESIDAGRP RDDXRLVKSL SPKIVTLVEQ ESNTNTAAFV PRFRETLDYY TAMFESIDAG  60
RPRDDKQRIS AEEHCMARDV VNIIACEGAD RVERHELFGK WSMRLKMAGF TPCPLSPSVG  120
EAINDMLKDY SSNYRIAESK GALYLGWKNR ALATTSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2415159227375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009629634.11e-101PREDICTED: scarecrow-like protein 13
RefseqXP_016490832.11e-101PREDICTED: scarecrow-like protein 13
SwissprotQ9LDL75e-70PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S4BPL81e-100A0A1S4BPL8_TOBAC; scarecrow-like protein 13
STRINGXP_009629634.11e-100(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.22e-72GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]