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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Niben101Scf01958g00002.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | GRAS | ||||||||
| Protein Properties | Length: 227aa MW: 24161.4 Da PI: 3.9821 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 27.5 | 3.8e-09 | 184 | 226 | 131 | 171 |
GRAS 131 aLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
+La Rp+gpps+RiTgv++++s l+ +gerLak Ae+
Niben101Scf01958g00002.1 184 SLARRPGGPPSVRITGVDDSQSAhaCGGGLQLVGERLAKAAES 226
79*****************99888999**************97 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03514 | 1.3E-6 | 184 | 226 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 227 aa Download sequence Send to blast |
MQASQRPMEN VEQYCSPYYV FNNNSNDTSS SGTQFSFQSP NEQFFTLDSL PAAGYVIYDS 60 PPAVSVSSNW SPFSPQYSQS TISDQHHSSD NTYGSPLSGC SGVDGVLSEM ANKLLGPESD 120 IDDSSSCSFN DVVSETSSLT KWNPVLEIAS SLDVKELLLA CAEAVSDAYF PAAEVLMNVL 180 EQKSLARRPG GPPSVRITGV DDSQSAHACG GGLQLVGERL AKAAESC |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016449052.1 | 1e-112 | PREDICTED: scarecrow-like protein 13, partial | ||||
| TrEMBL | A0A1S3YAM9 | 1e-110 | A0A1S3YAM9_TOBAC; scarecrow-like protein 13 | ||||
| STRING | XP_009629634.1 | 1e-105 | (Nicotiana tomentosiformis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G17230.1 | 7e-25 | SCARECROW-like 13 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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