PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01958g06004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 400aa    MW: 45930.4 Da    PI: 8.9775
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01958g06004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-065779123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C++C+ sF r  nL+ H r+H
  Niben101Scf01958g06004.1 57 YVCEICNLSFQREQNLQMHRRRH 79
                              9*********************9 PP
2zf-C2H215.74.2e-05139161123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C++ +  +s++k Hi+t+
  Niben101Scf01958g06004.1 139 WVCQKCSRGYAVQSDYKAHIKTC 161
                               58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.5E-65680IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-55679No hitNo description
Gene3DG3DSA:3.30.160.601.0E-45679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.6995779IPR007087Zinc finger, C2H2
SMARTSM003559.9E-45779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035590103133IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.12E-5134159No hitNo description
SMARTSM0035578139166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MLASHSFLFP APSHSEPFSS PENGFIIKRK RRPAGTPDPD AQVVYLTAEM LMESDRYVCE  60
ICNLSFQREQ NLQMHRRRHK VPWKLKKKEE EKNEMEQAKK RVYVCPEPSC VHHAPSHALG  120
DLVGIKKHFR RKHSNNKQWV CQKCSRGYAV QSDYKAHIKT CGTRGHSCDC GRVFSRVETF  180
IEHQDSCKAQ GTTTTKECDA QKPKPAQYIS NYSNSRMPKN ITHPNLELEL FTSSNYNQNT  240
YNFLENEQTP QINLSFCGQS DSNYYQVQHN GKAAALIKED ITIQVSKLKS EAKEILKIAM  300
EEKAMAAEKR QEAKCLIELA NLEMAKAREI RQQLLGEYST VQLLKDCAEM RIVGSQSHFK  360
IITCNSCNSK QFQTVSKEAA VCRDVFPAMT YYLSSSFYRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-17137189557Zinc finger protein JACKDAW
5b3h_F6e-17137189557Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462909.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
TrEMBLA0A1S3ZEY10.0A0A1S3ZEY1_TOBAC; protein SHOOT GRAVITROPISM 5-like
STRINGXP_009787306.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.13e-86C2H2-like zinc finger protein