PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01970g07019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 91aa MW: 10369.7 Da PI: 4.2472

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01970g07019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.2	1.4e-10	2	26	26	50
HHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 26 ELSvLCdaevaviifsstgklyeys 50 ELS+LCd++ + ii s++g+l++++ Niben101Scf01970g07019.1 2 ELSTLCDIKCCTIITSPQGELQTWP 26 9***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	8.37E-9	1	56	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-6	2	25	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MELSTLCDIK CCTIITSPQG ELQTWPENLD AVKQLLNLYT QTLNPNKTAK QSEEEEEIDI 60 LTLAESKLDA VNNRIRYLEN NNAGFAKQRI E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776067.1	4e-48	PREDICTED: MADS-box transcription factor 56-like
Refseq	XP_009799760.1	5e-47	PREDICTED: uncharacterized protein LOC104245789, partial
Refseq	XP_016469068.1	4e-48	PREDICTED: agamous-like MADS-box protein AGL81
TrEMBL	A0A1S3ZXJ4	1e-46	A0A1S3ZXJ4_TOBAC; agamous-like MADS-box protein AGL81
TrEMBL	A0A1U7W7S8	1e-46	A0A1U7W7S8_NICSY; MADS-box transcription factor 56-like
TrEMBL	A0A1U7YLP8	1e-45	A0A1U7YLP8_NICSY; uncharacterized protein LOC104245789
STRING	XP_009776067.1	2e-47	(Nicotiana sylvestris)
STRING	XP_009799760.1	2e-46	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3723	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39810.1	2e-08	AGAMOUS-like 98