PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01987g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 631aa    MW: 69462 Da    PI: 6.7789
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01987g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30249306260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                               +DgynWrKYGqK v+g+ f+rsYY+Ct+++C +kk+vers+ d+++++++Y g+H+h+k
  Niben101Scf01987g01005.1 249 EDGYNWRKYGQKLVRGNAFTRSYYKCTYPNCLAKKQVERSH-DGHITDVHYIGKHEHPK 306
                               8****************************************.***************85 PP
2WRKY81.11.1e-25425479159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dg++WrKYGqK vkg+++pr    C+ agCpvkk+ver+++dpk+v++tYeg+H+h+
  Niben101Scf01987g01005.1 425 VNDGHRWRKYGQKFVKGNPNPR----CSIAGCPVKKHVERASHDPKMVVTTYEGQHDHN 479
                               58*******************6....********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.322243307IPR003657WRKY domain
SuperFamilySSF1182902.75E-24244306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-25245306IPR003657WRKY domain
SMARTSM007742.0E-33248306IPR003657WRKY domain
PfamPF031068.4E-23249305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-27411479IPR003657WRKY domain
SuperFamilySSF1182901.7E-22417480IPR003657WRKY domain
PROSITE profilePS5081127.76420481IPR003657WRKY domain
SMARTSM007744.3E-31425480IPR003657WRKY domain
PfamPF031067.9E-19426478IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MTHVSLFGGG ITDTIKYLVQ VNDQLLDIDP TFPGENRGKI KQEKEATNEV SSENLQQKPD  60
PDPNPATDKS EINEKGGCES ISADVVSGEL QKRLSPDADT QASKSNQEET THPSTCQDVS  120
NKVQISQRHK GINVSQSNQY SKVQEYQSEN VQQKQGLKSG DSDAKSWGLE SGVRGKVVSP  180
LSGKASDQIQ RQILDVVVSQ SEQQLVAYPI RHEKALDKLQ PRRNPDTSGH GLPSDPGTTL  240
VRLPEKPLED GYNWRKYGQK LVRGNAFTRS YYKCTYPNCL AKKQVERSHD GHITDVHYIG  300
KHEHPKTPSG PQTSPGLVVP LQMRQPDIPM LTTSEEAEGE KSSTRETCEP SKPSEALLAL  360
DIVSAGGGMQ VTPLKPHKLE NEVDTNSGPD SKRQKRDIAK DDTPPIKSHS EPRHIVQTVS  420
EVDIVNDGHR WRKYGQKFVK GNPNPRCSIA GCPVKKHVER ASHDPKMVVT TYEGQHDHNM  480
SWFRTLSQIT AAPDLSISGE SRLESGETKH VGESISELDE KKHVGGPRIE LGETKHVGHS  540
ISESGANKHV RESRIESGEN KHVGASISGL GETKHVGESR TESGENKHVG QSRSESGENK  600
HVRVIPSPNV GPPLIEELHD DYVMIHQIDG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-26248480275WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484261.10.0PREDICTED: probable WRKY transcription factor 20 isoform X4
RefseqXP_016484262.10.0PREDICTED: probable WRKY transcription factor 20 isoform X4
TrEMBLA0A1S4B5Y80.0A0A1S4B5Y8_TOBAC; probable WRKY transcription factor 20 isoform X4
STRINGXP_009606902.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-63WRKY family protein