PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01991g05013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 151aa MW: 16759.4 Da PI: 9.3756

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01991g05013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.9	1e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p+ r+++++sl+yeA+ r+ +P+yG+vg++ Niben101Scf01991g05013.1 4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPDPLRPAIFRSLLYEACGRIVNPIYGSVGLL 88 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelallk 98 +++++ql+q ++e +l + Niben101Scf01991g05013.1 89 WSGNWQLCQNAVEDVLKG 106 *******999877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.492	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-24	4	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPDP 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EDVLKGAPIT PITSEVAVNN 120 NGPPLKLPYD IRHINKDDNA IKSNDLHRFK K

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016495337.1	1e-105	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-82	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1S4C2G1	1e-104	A0A1S4C2G1_TOBAC; LOB domain-containing protein 41-like
STRING	XP_009801662.1	1e-105	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-85	LOB domain-containing protein 41