PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01998g07002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 146aa MW: 16080.3 Da PI: 10.119

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01998g07002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.7e-06	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Niben101Scf01998g07002.1 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.4E-5	81	106	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.1E-6	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	1.5E-5	83	105	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	83	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MIKGMVGDDS MSNLTSASNE ASISSSNRAE IGSALYPQHL APANIQTQPA PANKKKRNLP 60 GNPDPEAEVI ALSPKSLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKEVK 120 KKVYVCPEPS CVHHHPSRAL GDLTGH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009793158.1	1e-102	PREDICTED: zinc finger protein NUTCRACKER-like
Refseq	XP_016453602.1	1e-102	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q8H1F5	2e-62	IDD7_ARATH; Protein indeterminate-domain 7
Swissprot	Q9LRW7	3e-62	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1S3YNL0	1e-100	A0A1S3YNL0_TOBAC; protein indeterminate-domain 7-like
TrEMBL	A0A1U7XQI8	1e-100	A0A1U7XQI8_NICSY; zinc finger protein NUTCRACKER-like
STRING	XP_009793158.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	9e-60	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]