PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02025g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 105aa MW: 11610.4 Da PI: 8.5051

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02025g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	57.5	5.4e-18	1	67	22	73
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa.sec 73 +Rls+++a+++F qd L fdk+skt+eWLl+++k a+ e ++ + +s sec Niben101Scf02025g00006.1 1 MRLSLDVARKIFNCQDLLAFDKASKTVEWLLTKSKSAVNEVVQGinkencsaatigvisT-PSTtSEC 67 8*****************************************997766666666655531.2222344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.9E-20	1	81	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.581	1	41	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MRLSLDVARK IFNCQDLLAF DKASKTVEWL LTKSKSAVNE VVQGINKENC SAATIGVIST 60 PSTTSECEVV SGIDESTTIN DIQKQPLKLR IKLTITEQMR RIANL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787900.1	9e-44	PREDICTED: transcription factor TCP12-like
Refseq	XP_016434825.1	9e-44	PREDICTED: transcription factor TCP12-like
TrEMBL	A0A1S3X4A5	2e-42	A0A1S3X4A5_TOBAC; transcription factor TCP12-like
TrEMBL	A0A1U7XN35	2e-42	A0A1U7XN35_NICSY; transcription factor TCP12-like
TrEMBL	Q6Y9W1	1e-44	Q6Y9W1_NICSY; TCP protein (Fragment)
STRING	XP_009787900.1	3e-43	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2482	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-15	TCP domain protein 12