PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02025g00011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 156aa MW: 17483.3 Da PI: 10.7701

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02025g00011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90.5	3.7e-28	34	110	4	66
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 kk rhski T+ +RdRR+Rls+++a+++F qd L fdk+skt+eWLl+++k a+ e ++ s Niben101Scf02025g00011.1 34 KKNRHSKINTAHVPRDRRMRLSLDVARKIFNCQDLLAFDKASKTVEWLLTKSKSAVNEVVQGinkencsaatigviS 110 9***********************************************************99666666666555542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-31	34	132	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.318	34	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MAANSNKDII LKKLKYKAVA RTKSDNKRVV AGYKKNRHSK INTAHVPRDR RMRLSLDVAR 60 KIFNCQDLLA FDKASKTVEW LLTKSKSAVN EVVQGINKEN CSAATIGVIS TPSTTSECEV 120 VSGIDESTTI NDIQKQPLKL RIKLTITEQM RRIANL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244778.1	4e-66	PREDICTED: transcription factor DICHOTOMA-like
TrEMBL	A0A1J6JE48	1e-64	A0A1J6JE48_NICAT; Transcription factor teosinte branched 1
STRING	XP_009787900.1	4e-62	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2482	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	4e-24	TCP domain protein 12