PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02041g04018.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 324aa MW: 37769.7 Da PI: 6.5282

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02041g04018.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.1	5.6e-26	198	246	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ledl+kyF+lpi +A+++L+++lTvLK++CR++GI+RWPhRkiksl Niben101Scf02041g04018.1 198 MLALEDLAKYFDLPIVEASRSLKIGLTVLKKKCREFGIPRWPHRKIKSL 246 6899*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.315	181	266	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	199	246	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MASSQNRTLT ALVIFQNFLY PVMFRSVHVY RTEGGKEEME EREYLFHETS NFEETGFSPV 60 ITLHKFDVSA QFVGIENGVW KCMFVYDSGR HQSNRTNASS EWLSFAENPK MDFIPTLAND 120 LRAISELALN VEFRDSSGRS STEESGGNNI KSNQPDVKHR VPFLDLNSLP YSDSDVEEND 180 QNASENKKRR AATKDIAMLA LEDLAKYFDL PIVEASRSLK IGLTVLKKKC REFGIPRWPH 240 RKIKSLDSLI HDLQEEMHRQ QEEDELAAIA VEERKRMIEY ERESIEKKPF MDIQKETKKF 300 RQDIFKRRYK SRVLENQCRT LPLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019238159.1	0.0	PREDICTED: protein RKD5 isoform X1
TrEMBL	A0A1J6KS08	0.0	A0A1J6KS08_NICAT; Protein rkd5
STRING	XP_009597270.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14425	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-70	RWP-RK domain-containing protein