PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02044g02014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 152aa    MW: 16869.2 Da    PI: 9.9448
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02044g02014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00064668123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C++ F ++  L  H++ H
  Niben101Scf02044g02014.1 46 FSCNFCKRKFYNSQALGGHQNAH 68
                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-43972IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.17E-74273No hitNo description
PROSITE profilePS5015711.0114673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MISAVDGNQG TSVLDQGEWL NLSLGRNLPS IYKESESHIP TSAKVFSCNF CKRKFYNSQA  60
LGGHQNAHKR ERGAVRQYQS QRMMTMMALP INNPMFRSLG MIPHSLVHKS GRDVSATVVM  120
FSEAGAGFQM TSHTNQMNGS FDLKWPGTPE TT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255476.11e-100PREDICTED: zinc finger protein 7-like
TrEMBLA0A1J6HWF16e-99A0A1J6HWF1_NICAT; Zinc finger protein 7
STRINGXP_009617394.11e-98(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32691313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.16e-17zinc finger protein 7