PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02044g03004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 315aa    MW: 33929.3 Da    PI: 6.5099
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02044g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.31.8e-12225254229
                      GATA   2 snCgttk..TplWRrgpdgnktLCnaCGly 29 
                               s+Cg ++  Tp++Rrgp g+++LCnaCG y
  Niben101Scf02044g03004.1 225 SHCGISSkfTPMMRRGPAGPSSLCNACGTY 254
                               699999899*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.8E-590125IPR010399Tify domain
PROSITE profilePS5132011.52890125IPR010399Tify domain
PfamPF062003.3E-693123IPR010399Tify domain
PfamPF062033.3E-16157199IPR010402CCT domain
PROSITE profilePS5101713.245157199IPR010402CCT domain
SMARTSM004013.4E-4218278IPR000679Zinc finger, GATA-type
CDDcd002021.40E-9225262No hitNo description
Gene3DG3DSA:3.30.50.103.9E-9225254IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.0E-10225254IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-6225257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MYRRETMNGI VHQERHQQTH FAEGKDDDDD VDVDGGGGGG ESIDDPSHHI RYDHNYHHAL  60
HNGGAGATME EAAALNVVEG VAHNALYVPG VGSSNQLRLS FRGQVFGYPD VSPEKVQAVM  120
LLLDGYEVPT GPAAVNVASQ SHWASSEGPG RLNQPQRAAS LSRFREKRKE RCFDKKIRYT  180
VRKEVALRMQ RKKGQFTSSK SISDEAGSSS AEGNAGSSQE EPETSHCGIS SKFTPMMRRG  240
PAGPSSLCNA CGTYGILRDR SKVSTAGAPD HTVKSSEQSN DEANGSDAMA AGGIITSDDE  300
NTVLPLTIST RTLHY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616899.10.0PREDICTED: GATA transcription factor 24-like
RefseqXP_016446080.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL74e-61GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3Y1U50.0A0A1S3Y1U5_TOBAC; GATA transcription factor 24-like
STRINGXP_009616899.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-55ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]