PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02044g08008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 343aa    MW: 38443.1 Da    PI: 7.2011
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02044g08008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.9e-51131461129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                               lppGfrFhP+deel+++yL kkv+g+         +     + evd++k+ePw++p+ +  + kewyf+s+rd+kyatg r+nra
  Niben101Scf02044g08008.1  13 LPPGFRFHPRDEELICDYLMKKVAGSGsgseS---DrhypLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRA 94 
                               79**********************99966542...13443599*************7666789********************** PP

                       NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               t sgyWkatgkd++++++++ lvg++ktLvfy+grapkg+ktdWvmhe+rle
  Niben101Scf02044g08008.1  95 TISGYWKATGKDRAIMRTGSCLVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 146
                               *************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-603168IPR003441NAC domain
PROSITE profilePS5100556.6513167IPR003441NAC domain
PfamPF023653.0E-2614145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSNSSLSMVE SKLPPGFRFH PRDEELICDY LMKKVAGSGS GSESDRHYPL LIEVDLNKSE  60
PWEIPEVACV GGKEWYFYSQ RDRKYATGLR TNRATISGYW KATGKDRAIM RTGSCLVGMR  120
KTLVFYQGRA PKGRKTDWVM HEFRLETTPP HISSLKEDWV LCRVFHKNKE LLATKQGTRS  180
SIYHEHDTIS SSSLPPLMDP YITFDQTQPN NININTINMN ELYYEQVPCF SIFNPNQTFS  240
SHSHHLPTTT TAETTDAYGG LPADIGTYLN AAATSSSCDN KVIKAVLSHL NNMEGSHNNI  300
NNPAHNNIVN IKAGGSPTSF GEGSSETSFL SEVGLTTMWN NHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-49816812166NO APICAL MERISTEM PROTEIN
1ut4_B1e-49816812166NO APICAL MERISTEM PROTEIN
1ut7_A1e-49816812166NO APICAL MERISTEM PROTEIN
1ut7_B1e-49816812166NO APICAL MERISTEM PROTEIN
3swm_A1e-49816815169NAC domain-containing protein 19
3swm_B1e-49816815169NAC domain-containing protein 19
3swm_C1e-49816815169NAC domain-containing protein 19
3swm_D1e-49816815169NAC domain-containing protein 19
3swp_A1e-49816815169NAC domain-containing protein 19
3swp_B1e-49816815169NAC domain-containing protein 19
3swp_C1e-49816815169NAC domain-containing protein 19
3swp_D1e-49816815169NAC domain-containing protein 19
4dul_A1e-49816812166NAC domain-containing protein 19
4dul_B1e-49816812166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229526.10.0PREDICTED: NAC domain-containing protein 21/22-like isoform X1
SwissprotQ84TE61e-107NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A314KL700.0A0A314KL70_NICAT; Nac domain-containing protein 2122
STRINGXP_009782234.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-106NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]