PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02060g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 89aa    MW: 10078 Da    PI: 11.0711
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02060g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.54.1e-141159148
                              S---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifsstgklye 48
                              k+i  +s r vtfskRr+g+ KKA EL S   +++vav++fs+t k y+
  Niben101Scf02060g00010.1 11 KKITKESSRMVTFSKRRKGLYKKAVELeSKTRGVQVAVLVFSPTAKPYT 59
                              678999*********************777789**********998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-14363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.371364IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-18474IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-9525IPR002100Transcription factor, MADS-box
PfamPF003191.0E-181259IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-92540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGTGKKKIEI KKITKESSRM VTFSKRRKGL YKKAVELESK TRGVQVAVLV FSPTAKPYTC  60
GGIDVINHLS KPLGFFSFFR VSNKWYVGF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237490.13e-26PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A1J6KBP41e-24A0A1J6KBP4_NICAT; Uncharacterized protein
TrEMBLA0A2G2W7L63e-24A0A2G2W7L6_CAPBA; Agamous-like MADS-box protein AGL61
TrEMBLA0A2G3BTX03e-24A0A2G3BTX0_CAPCH; Agamous-like MADS-box protein AGL61
STRINGPGSC0003DMT4000294331e-24(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.17e-10AGAMOUS-like 102