PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02062g09011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 345aa MW: 39278.6 Da PI: 6.5

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02062g09011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8e-05	182	201	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Niben101Scf02062g09011.1 182 FSCPLCFKTFNRYNNMQMHM 201 89*****************9 PP
2	zf-C2H2	14.9	7.5e-05	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + + ++H +++ Niben101Scf02062g09011.1 266 FMCSKCGKAFAVRGDWRTHEKNC 288 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	182	209	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-5	182	201	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.61	182	204	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	184	204	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.76E-7	248	286	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-6	262	286	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	38	266	286	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.974	266	286	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MSDPYTNYFH GWFNNLNPLY HFSSSSSSSS SYNYILPSTN FQYNEYFQTS PPSPPLKEPL 60 PLLSLSPTIR QIQDQDYSSN VTTMEVDNNT NNSKENKEES FISNFGDDQE DDESVSVALQ 120 LGLPNPSPEL ISRISTTNII EETNKEDQEV TLANGYSTTS TLHKGQYWIP TPAQILIGPT 180 QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCFC CAPGCRNNID 240 HPRAKPLKDF RTLQTHYKRK HGIKPFMCSK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF 300 KHKRSLKDHI KAFGNGHAAY GIDCLEEEDE PASEIEHDND HDPSN

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MSDPYTNYFH GWFNNLNPLY HFSSSSSSSS SYNYILPSTN FQYNEYFQTS PPSPPLKEPL  60
PLLSLSPTIR QIQDQDYSSN VTTMEVDNNT NNSKENKEES FISNFGDDQE DDESVSVALQ  120
LGLPNPSPEL ISRISTTNII EETNKEDQEV TLANGYSTTS TLHKGQYWIP TPAQILIGPT  180
QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCFC CAPGCRNNID  240
HPRAKPLKDF RTLQTHYKRK HGIKPFMCSK CGKAFAVRGD WRTHEKNCGK LWYCTCGSDF  300
KHKRSLKDHI KAFGNGHAAY GIDCLEEEDE PASEIEHDND HDPSN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244736.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-139	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1J6IJB6	0.0	A0A1J6IJB6_NICAT; Zinc finger protein wip2
STRING	XP_009780788.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-132	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]