PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02069g00017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 334aa    MW: 37749.8 Da    PI: 4.9685
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02069g00017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY322.5e-10132153223
                               --SS-EEEEEEE--TT-SS-EE CS
                      WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                               dDgy+WrKYGqK++ g+++prs
  Niben101Scf02069g00017.1 132 DDGYSWRKYGQKDILGAKYPRS 153
                               8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-8126153IPR003657WRKY domain
SuperFamilySSF1182902.88E-12130172IPR003657WRKY domain
SMARTSM007749.2E-16131172IPR003657WRKY domain
PfamPF031063.2E-7132153IPR003657WRKY domain
PROSITE profilePS5081110.177132166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MHCGFNWEYN SLINELIQGM EHAKQLRAYF SSTASSDKIQ ELHLHMQIIL SSFENSLSIL  60
KWTAITQTPQ LVVAPPPSIS VDEISPKTDD LNGNFKDNDQ DLRYVSKKRK QLPTWTEQVR  120
VSVENGFEGP TDDGYSWRKY GQKDILGAKY PRSDDDPALF EITYKGSHTC NQAFNSAAQP  180
TSPEKHEFKK QANYPKIERS NQMLANLQAN LRVNTNDLNK KETTCSFPFS PTFSGFVDEN  240
LHFQVSQVDD NLVGGYSPSF VSPTTPESSY FSLPSCEMNG SRLIHSLHHS ESDLPDLFSA  300
NTSSTSSPIV GLEFPLEHVE LDPNFPFDNS EFFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109LRYVSKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785573.10.0PREDICTED: probable WRKY transcription factor 41
RefseqXP_016494385.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S4BZQ80.0A0A1S4BZQ8_TOBAC; probable WRKY transcription factor 41
TrEMBLA0A1U7X3Y60.0A0A1U7X3Y6_NICSY; probable WRKY transcription factor 41
STRINGXP_009785573.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-45WRKY family protein