PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02073g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 277aa    MW: 30982.9 Da    PI: 6.1695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02073g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.8e-12110157355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h  +Er+RR+r  + f+ L + +P +      Kl+Ka+iLe  ++YI +Lq
  Niben101Scf02073g03007.1 110 QDHLLAERKRRERFTQLFAVLAKTIPGL-----NKLDKASILEDSIKYIGELQ 157
                               668899*********************8.....6****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1498165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.322107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9110157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13111166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-10112161No hitNo description
SMARTSM003531.1E-12113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MENASFNNLE NRDGGEEAFE FKNLLSEMFT SFPNQNPSSN SSLMEIPKIG FSSSPNSSTS  60
TNSSSSSSPN IISFGNPESN FVDYEMISEK VINLSSSPTK RICRSPLQSQ DHLLAERKRR  120
ERFTQLFAVL AKTIPGLNKL DKASILEDSI KYIGELQGRV RALEESGTTK SRNLIESTST  180
EQKQFPLATS DDNSFLAKNF DETKPDQNDI KVQILDKNVL LGIHCSKEMR SIFTIIAGIM  240
EQLHLTIHHI RVTPSNHIAL HYISVLAEVI SYCLSFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016472309.11e-160PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4A6S71e-158A0A1S4A6S7_TOBAC; transcription factor bHLH18-like
STRINGXP_009623662.11e-151(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125981122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-21bHLH family protein