PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02073g03008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 163aa MW: 18441.5 Da PI: 7.5107

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02073g03008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.9	2.4e-10	10	57	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+R +++ + f L +++P + kKl+K++iL ++eY+k+Lq Niben101Scf02073g03008.1 10 QEHVTAERKRGEKMGELFISLSKVVPGL-----KKLDKSSILGDTIEYMKELQ 57 56999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.897	7	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-8	10	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-15	11	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-15	12	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-8	12	61	No hit	No description
SMART	SM00353	2.8E-11	13	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MYKRNPLEAQ EHVTAERKRG EKMGELFISL SKVVPGLKKL DKSSILGDTI EYMKELQQQV 60 KVLEETMKNI ASKENINCID DQVLGSKIKA RILDKSVLIN IHCNKQDGVV GRVLFEMEQL 120 HLSVNDIRIM PFGPRNLEMS ILAEDIVNSL QINILNQVQS AVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019249040.1	5e-96	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A1S4A6N7	2e-92	A0A1S4A6N7_TOBAC; transcription factor bHLH18-like
TrEMBL	A0A1U7VKZ0	2e-92	A0A1U7VKZ0_NICSY; transcription factor bHLH18-like
STRING	XP_009768662.1	3e-93	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8864	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-28	bHLH family protein