PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02081g03009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 189aa    MW: 21973.8 Da    PI: 8.8274
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02081g03009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.41.6e-119107597
                       NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLp.k...kvkaeekewy.fFskrdkkyatgkrknr.atksgy 82 
                               frF+Ptd+  +++ L+  v+++ +++  + ++vd+y k ePw++  +   + + e++  y +F+++ kk++ + r +r + ++g+
  Niben101Scf02081g03009.1   9 FRFRPTDSKGLMFLLRFAVAQEMHDAGFITTKVDVYgKQEPWEIYdHgvpCGDDEDNTSYrYFITKLKKKS-NARYHRsVRNKGT 92 
                               9********998888888888888885557888*99456*****743555333344444424444444444.5677775778*** PP

                       NAM  83 Wkatgkdkevlskkg 97 
                               Wk+  k k+v+ ++ 
  Niben101Scf02081g03009.1  93 WKQDNKGKPVHYQNM 107
                               **********98632 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.6225166IPR003441NAC domain
PfamPF023658.4E-77125IPR003441NAC domain
SuperFamilySSF1019412.35E-129146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEQLGQVDFR FRPTDSKGLM FLLRFAVAQE MHDAGFITTK VDVYGKQEPW EIYDHGVPCG  60
DDEDNTSYRY FITKLKKKSN ARYHRSVRNK GTWKQDNKGK PVHYQNMGKS SSEKDGHWLM  120
KKYELCKVIL HKFDKDRRDY VLCAIKKLKH VNSSSETSTI TTLHNISDGT DEDQSAYDMQ  180
CQTDKTSVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782736.11e-98PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A1U7WZB93e-97A0A1U7WZB9_NICSY; protein CUP-SHAPED COTYLEDON 1-like
STRINGXP_009782736.15e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-08NAC domain containing protein 32