PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02085g08002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 196aa    MW: 22295.1 Da    PI: 4.9713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02085g08002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-054264123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C++ Fs+   L  H++ H
  Niben101Scf02085g08002.1 42 YRCSFCKRGFSNAQALGGHMNIH 64
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.64E-74068No hitNo description
Gene3DG3DSA:3.30.160.602.2E-44066IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4684269IPR007087Zinc finger, C2H2
SMARTSM003550.00534264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTSSPYCSKY LFIPSSKPCP FISMEIDPSN SEKSDELHVK FYRCSFCKRG FSNAQALGGH  60
MNIHRKDRAR LREFSSENLL SLDINNSVNP PPLAPANEDS LQHEVSYDET ISSPTKRPCV  120
NTSEENDHYD DHNHEMIIGD FLQLPLLKET PLIKEASNCV DKQVEEKSMQ LNPVSELDLE  180
LRLGMEPPHE SLMKTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229488.11e-119PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A314KKV01e-118A0A314KKV0_NICAT; Transcriptional regulator tac1
STRINGXP_009596834.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-15C2H2 family protein