PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02111g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 175aa    MW: 19412.8 Da    PI: 10.371
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02111g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-193670135
                      GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                              C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Niben101Scf02111g00012.1 36 CVDCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
                              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.733066IPR000679Zinc finger, GATA-type
SMARTSM004015.6E-153080IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.99E-133170No hitNo description
CDDcd002023.53E-133586No hitNo description
Gene3DG3DSA:3.30.50.101.1E-153570IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403661IPR000679Zinc finger, GATA-type
PfamPF003204.8E-173670IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MMDFSDKVAE NEEISEQNQT PERVLSETRE SQLKTCVDCG TTKTPLWRGG PAGPKSLCNA  60
CGIRSRKKRR ALLGLNKEDK KPKKSMGSSN RSVGQHHNQN NQSSNSSTSS SEESTTSNAV  120
KNNKCIPFKK RLLHFGREVA LQRPRSSSTQ HRRKLGEEEQ AAFLLMALSC GSVYA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767636.11e-100PREDICTED: GATA transcription factor 15-like isoform X2
TrEMBLA0A1U7VRQ42e-98A0A1U7VRQ4_NICSY; GATA transcription factor 15-like isoform X2
STRINGXP_009590421.13e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-36GATA transcription factor 15