PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02111g26009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 227aa MW: 25890.5 Da PI: 4.5969

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02111g26009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.2e-15	14	67	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 rg+WT eEd l++ ++++G g+W++ ar+ g gRt++++k++w++ Niben101Scf02111g26009.1 14 RGSWTVEEDFTLINHIALHGEGCWNSLARCAGgpkllnilPGRTDNEIKNYWRT 67 89**************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-19	6	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.236	9	73	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-13	9	74	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-12	13	71	IPR001005	SANT/Myb domain
Pfam	PF00249	9.9E-13	14	67	IPR001005	SANT/Myb domain
CDD	cd00167	8.65E-12	16	67	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MDHRVNEDNM DLKRGSWTVE EDFTLINHIA LHGEGCWNSL ARCAGGPKLL NILPGRTDNE 60 IKNYWRTRVQ KHAKQLKCDV NSKQFKDTLR YLWMPRLVER IQASSNSAAT TSITSNDNSN 120 NHASTSVMQE NSSVTASSEN SMATQVSPVS DISDCCYNNY PINQSDYGEL LISPTGYFQH 180 GALDIRTVDY NNQQNMSQWM EETEDVSDNL WNIEDMLFLQ QQLNNDV

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799770.1	1e-127	PREDICTED: transcription factor MYB108-like
Refseq	XP_016494481.1	1e-127	PREDICTED: transcription factor MYB108-like
Swissprot	Q9FGY3	1e-48	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A1S4C005	1e-126	A0A1S4C005_TOBAC; transcription factor MYB108-like
TrEMBL	A0A1U7YLQ8	1e-126	A0A1U7YLQ8_NICSY; transcription factor MYB108-like
STRING	XP_009799770.1	1e-126	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1397	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	8e-47	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]