PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02112g02009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 183aa MW: 20549.4 Da PI: 9.3801

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02112g02009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	91	2.9e-28	8	122	5	124
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 ++seq+Cy+ Cn+Cn +lavsvP + lf +vtvrCGhCt++ +vn+a a q +++ + +++ + +++++ e +++ +++ Niben101Scf02112g02009.1 8 TNSEQLCYIPCNYCNIVLAVSVPCSNLFDIVTVRCGHCTNMWTVNMAAAFQSSSSSWQ-SHTHHLHQVANYTPPEYKIDFGSSSK 91 579****************************************9998887777766.66777777777777777777776666 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqr 124 ++++ +l++n +ee v+rPPekrqr Niben101Scf02112g02009.1 92 CNSRNMAVRPSLTKNPREERI----VNRPPEKRQR 122 666666666666666666554....8******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.2E-32	9	122	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MTTCIDSTNS EQLCYIPCNY CNIVLAVSVP CSNLFDIVTV RCGHCTNMWT VNMAAAFQSS 60 SSSWQSHTHH LHQVANYTPP EYKIDFGSSS KCNSRNMAVR PSLTKNPREE RIVNRPPEKR 120 QRWAHFPHIH FGLTLETKNQ AKLGVSENAE KHIMNRAAIP KIKNFTLGAD PGNKKGIHKN 180 LGS

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762052.1	1e-102	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016452662.1	1e-102	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-45	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3YL24	1e-101	A0A1S3YL24_TOBAC; axial regulator YABBY 5-like
TrEMBL	A0A1U7V1C3	1e-101	A0A1U7V1C3_NICSY; axial regulator YABBY 5-like isoform X1
STRING	XP_009762052.1	1e-102	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-45	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]