PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02132g02009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 508aa MW: 56083.6 Da PI: 8.3691

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02132g02009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.5	7.6e-30	221	280	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ ed +++++tYeg+Hnh+ Niben101Scf02132g02009.1 221 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCIEDMSILITTYEGTHNHP 280 58*************************99**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-30	206	280	IPR003657	WRKY domain
SuperFamily	SSF118290	1.07E-26	214	281	IPR003657	WRKY domain
PROSITE profile	PS50811	26.739	216	282	IPR003657	WRKY domain
SMART	SM00774	1.7E-35	221	281	IPR003657	WRKY domain
Pfam	PF03106	1.1E-26	222	280	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MEAAFRKSIN GGLVKEEKRN KLADQSSSDE EGFVKDNNVL KDDQLQSVKV NMKEVMKENQ 60 RLKMHLDGIM KDYRNLQLQF HDIVQRDAEK PDISIINTRH NERNEAEFVS LSLGRTSSDT 120 KKEALSKISS KDNAKEEDSK GDLTLGFDCK FDLSVKNPPT ESSTANISEE KSSEEVKDEK 180 VETWPPHKIL KTMRNGEDDT QLNPSKRAKV SVRVRCDAPT MNDGCQWRKY GQKIAKGNPC 240 PRAYYRCTVA PSCPVRKQVQ RCIEDMSILI TTYEGTHNHP HSLSATSMAF TTSAAASVLL 300 SGSSSTSESR PNLPATNITN INGLNFYLSD SSKPKPFYLQ NPSISSSSSP TTITLDLTSS 360 SSTSLFPNHN RMSSNYLPRY NSSTNILNFS SLESNSLLSM SWSNGAYNKN QEISSLSFAK 420 GPQENIFQSY LQNNISAKPT QTLLQQDTIA AATKAITSDP NFQSALAVAL IGSGGRNHAG 480 GIEEKSGQNL KVTEPFPVLC SFPSTSNK

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MEAAFRKSIN GGLVKEEKRN KLADQSSSDE EGFVKDNNVL KDDQLQSVKV NMKEVMKENQ  60
RLKMHLDGIM KDYRNLQLQF HDIVQRDAEK PDISIINTRH NERNEAEFVS LSLGRTSSDT  120
KKEALSKISS KDNAKEEDSK GDLTLGFDCK FDLSVKNPPT ESSTANISEE KSSEEVKDEK  180
VETWPPHKIL KTMRNGEDDT QLNPSKRAKV SVRVRCDAPT MNDGCQWRKY GQKIAKGNPC  240
PRAYYRCTVA PSCPVRKQVQ RCIEDMSILI TTYEGTHNHP HSLSATSMAF TTSAAASVLL  300
SGSSSTSESR PNLPATNITN INGLNFYLSD SSKPKPFYLQ NPSISSSSSP TTITLDLTSS  360
SSTSLFPNHN RMSSNYLPRY NSSTNILNFS SLESNSLLSM SWSNGAYNKN QEISSLSFAK  420
GPQENIFQSY LQNNISAKPT QTLLQQDTIA AATKAITSDP NFQSALAVAL IGSGGRNHAG  480
GIEEKSGQNL KVTEPFPVLC SFPSTSNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-19	221	279	14	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019223561.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	0.0	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A314KWZ5	0.0	A0A314KWZ5_NICAT; Putative wrky transcription factor 72
STRING	XP_009616443.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-60	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]