PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02151g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 129aa MW: 14802.9 Da PI: 8.3327

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02151g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.4	3.8e-23	10	46	2	38
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 rienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i Niben101Scf02151g01003.1 10 RIENKINRQVTFSKRRGGLVKKAHEISVLCDAEVALI 46 8***********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-26	1	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.17	1	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-22	1	47	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-21	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-19	10	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-21	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-21	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MGRGKVQLRR IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVALIEKAI QEENNMLTKK 60 IKDKDNTVGK QAEWHQQHQV PTSTSFLLQQ HPCLNIGGNY QEEAAEERRN ELDLNLDSMY 120 PCYMGCFAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
1tqe_R	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
1tqe_S	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
6byy_A	1e-18	1	87	1	85	MEF2 CHIMERA
6byy_B	1e-18	1	87	1	85	MEF2 CHIMERA
6byy_C	1e-18	1	87	1	85	MEF2 CHIMERA
6byy_D	1e-18	1	87	1	85	MEF2 CHIMERA
6c9l_A	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
6c9l_B	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
6c9l_C	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
6c9l_D	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
6c9l_E	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
6c9l_F	2e-18	1	87	1	85	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019256939.1	5e-45	PREDICTED: truncated transcription factor CAULIFLOWER A-like
Swissprot	Q6E6S7	8e-28	AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBL	A0A1J6IL62	1e-43	A0A1J6IL62_NICAT; Floral homeotic protein apetala 1 c
TrEMBL	A0A328CXZ8	1e-44	A0A328CXZ8_9ASTE; Uncharacterized protein
STRING	XP_009778843.1	3e-42	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA499	23	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	2e-24	AGAMOUS-like 8

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]