PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02164g06008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 359aa    MW: 39568.3 Da    PI: 5.0248
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02164g06008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27e-16235270134
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg
  Niben101Scf02164g06008.1 235 CHHCGVSEtcTPAMRRGPDGPRTLCNACGLKWANKG 270
                               ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.2E-797132IPR010399Tify domain
PROSITE profilePS5132012.45297132IPR010399Tify domain
PfamPF062004.1E-9101131IPR010399Tify domain
PROSITE profilePS5101712.689162204IPR010402CCT domain
PfamPF062031.0E-14162203IPR010402CCT domain
SMARTSM004014.1E-14229282IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-11232282No hitNo description
PROSITE profilePS501149.13234287IPR000679Zinc finger, GATA-type
CDDcd002024.87E-16234281No hitNo description
Gene3DG3DSA:3.30.50.105.6E-14234276IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440235262IPR000679Zinc finger, GATA-type
PfamPF003206.5E-14235270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSSDHPTEGF HVLITGFQFH GVYIDIYRES IMMAANPRPL QARLYEDHAP LQSIQMEEDD  60
DGTYEDDGGE ETMDEAEEIR TKVFNHHQYG GGGGVVEVSR SSELTLAFEG EVYVFPAVTP  120
EKVQAVLLLL GGCDIPTAVP TVEVPFDNKV EDFPKQVNLS RRFASLVRFR EKRKERCFDK  180
KIRYSVRKEV AQRMHRKNGQ FASLKESSGS SSCDSAKSSL EGDGTQHSET VPGKCHHCGV  240
SETCTPAMRR GPDGPRTLCN ACGLKWANKG ILRDLSKRGR KISVEPKELG TPENPMKAFA  300
EGSLDHCADV EKNLFNAGSN LANEIPAGII SSSDLVEEET LVDIGNASKT EIDIPANFD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759907.10.0PREDICTED: GATA transcription factor 24-like
RefseqXP_016508029.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ8GXL72e-67GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S4D4290.0A0A1S4D429_TOBAC; GATA transcription factor 19-like
TrEMBLA0A1U7UV440.0A0A1U7UV44_NICSY; GATA transcription factor 24-like
STRINGXP_009759907.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-59ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]