PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02172g04005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 367aa MW: 40541.8 Da PI: 10.1731

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02172g04005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.4e-16	166	212	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq Niben101Scf02172g04005.1 166 VHNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 212 5***********************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.2E-17	161	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.739	162	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-18	165	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-13	166	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.99E-16	167	216	No hit	No description
SMART	SM00353	1.0E-16	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MHRLGNNLPT EQTKHTWERA NDTLESVVHQ ATNCQKQNLD LKGSDKNKAN INTENIVKQE 60 TIGGVAKKRM RSDSDPQLYG TSGRLVGEFH KNIFHQNAEP SASASVRDTI MTWPNYHSLD 120 ESSRSFKSKA TFNEDSACHI AGLENKEEER ETKGSNTLRR SRTAAVHNQS ERRRRDRINE 180 KMKALQKLVP NASKTDKASM LDEVIKYLKQ LQAQIQLISN ARNMESQMMM QLPLGMQLPH 240 IQMPLLARTG MGVNLGMTPG MLNNMTANLA RAAAAPHQSL TAPFIYPTSI ATSCPPFMSP 300 AFAMAPTIPT PPQANGDANA SRAAVAPGVS NSFPFNDPRX PMRMQAELQS PPVSPIHSLL 360 TTPALHL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MHRLGNNLPT EQTKHTWERA NDTLESVVHQ ATNCQKQNLD LKGSDKNKAN INTENIVKQE  60
TIGGVAKKRM RSDSDPQLYG TSGRLVGEFH KNIFHQNAEP SASASVRDTI MTWPNYHSLD  120
ESSRSFKSKA TFNEDSACHI AGLENKEEER ETKGSNTLRR SRTAAVHNQS ERRRRDRINE  180
KMKALQKLVP NASKTDKASM LDEVIKYLKQ LQAQIQLISN ARNMESQMMM QLPLGMQLPH  240
IQMPLLARTG MGVNLGMTPG MLNNMTANLA RAAAAPHQSL TAPFIYPTSI ATSCPPFMSP  300
AFAMAPTIPT PPQANGDANA SRAAVAPGVS NSFPFNDPRX PMRMQAELQS PPVSPIHSLL  360
TTPALHL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	175	ERRRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801833.1	0.0	PREDICTED: transcription factor PIF7
TrEMBL	A0A1U7YFB6	0.0	A0A1U7YFB6_NICSY; transcription factor PIF7
STRING	XP_009801833.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5437	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-32	bHLH family protein