PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02182g19004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 178aa    MW: 19906.7 Da    PI: 7.5047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02182g19004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.5e-191362356
                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              y+GVr +k +g+Wv+eIr+p   gk++r++lg++ t+e+Aa+a++ a+  l+ge
  Niben101Scf02182g19004.1 13 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAAFHLKGE 62
                              9****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-321270IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-221270IPR016177DNA-binding domain
PROSITE profilePS5103223.2481269IPR001471AP2/ERF domain
SMARTSM003807.1E-361275IPR001471AP2/ERF domain
PfamPF008472.0E-121362IPR001471AP2/ERF domain
CDDcd000184.16E-231371No hitNo description
PRINTSPR003671.0E-121324IPR001471AP2/ERF domain
PRINTSPR003671.0E-125171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEDPQEKSNI HMYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPEMAAA AYDVAAFHLK  60
GERARLNFPE LIHSFPKPSS SKPEDVQMSA HEAAMRFKRQ TPEPPEGGGC GGGGTVVPVR  120
VGLSSSQIQA INESPLDSPK MWMELAGALL LRDPVREYTC PSYSFTDPMV LCEDIAEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-191374668ATERF1
3gcc_A8e-191374668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257968.12e-99PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I23e-47ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1J6IEM15e-98A0A1J6IEM1_NICAT; Ethylene-responsive transcription factor erf022
STRINGXP_009619745.13e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.15e-47ERF family protein