PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02182g21007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 176aa    MW: 19614.2 Da    PI: 8.2081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02182g21007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-181869156
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f+t+e A +a++ a++ l+g+
  Niben101Scf02182g21007.1 18 SPYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTPELAVAAYDSAALHLKGH 69
                              68*****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-211877IPR016177DNA-binding domain
SMARTSM003801.8E-311982IPR001471AP2/ERF domain
PROSITE profilePS5103221.9831976IPR001471AP2/ERF domain
CDDcd000188.26E-292078No hitNo description
PRINTSPR003673.0E-122031IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-302077IPR001471AP2/ERF domain
PfamPF008471.8E-112069IPR001471AP2/ERF domain
PRINTSPR003673.0E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEENNNTSKP SRRGGVTSPY RGVRKRKWGK WVSEIREPGK KTRIWLGSFD TPELAVAAYD  60
SAALHLKGHA AKLNFPELVE FLPKPSSCSP DDIRFAAQEA ALKVKRNSEQ IASSSATNNL  120
APVTIGLSPS HIQAINDFPM DSPKMWSDVT REYVGEETMF TCNDYEMIST TGPFYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-162079363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-162079666ATERF1
3gcc_A6e-162079666ATERF1
5wx9_A7e-161476972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244673.11e-111PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I29e-48ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1J6JBN51e-110A0A1J6JBN5_NICAT; Ethylene-responsive transcription factor erf021
STRINGXP_009757757.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-42ERF family protein