PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02188g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 129aa    MW: 14603.4 Da    PI: 10.4267
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02188g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.67.8e-1198118121
                               ---SS-EEEEEEE--TT-SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefp 21 
                               ldDgy+WrKYGqK vk++++p
  Niben101Scf02188g00002.1  98 LDDGYRWRKYGQKAVKNNNYP 118
                               59*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575116No hitNo description
Gene3DG3DSA:2.20.25.801.8E-1283118IPR003657WRKY domain
SuperFamilySSF1182901.96E-990119IPR003657WRKY domain
PROSITE profilePS5081112.27793118IPR003657WRKY domain
SMARTSM007740.005598127IPR003657WRKY domain
PfamPF031064.6E-799118IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MENRSITMVH YGSTSCARTI SDSFSNSTNI GYNSMNGWTS GLKTEISNST AREQNSPVGM  60
VSSENHTTTI ISSLKKKGDK KIKKPRFAFQ TRSQVDILDD GYRWRKYGQK AVKNNNYPSF  120
TIMNENFKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788059.13e-55PREDICTED: probable WRKY transcription factor 43
RefseqXP_016437762.13e-55PREDICTED: probable WRKY transcription factor 43
TrEMBLA0A1S3XCY27e-54A0A1S3XCY2_TOBAC; probable WRKY transcription factor 43
TrEMBLA0A1U7XM877e-54A0A1U7XM87_NICSY; probable WRKY transcription factor 43
STRINGXP_009788059.11e-54(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22042461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.11e-18WRKY DNA-binding protein 75