PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02188g02025.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 438aa MW: 47234.6 Da PI: 7.7813

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02188g02025.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.2	1.2e-37	69	151	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 a+k+++++++hTkv+gR+RR+R++ +caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ ++ss+s++ Niben101Scf02188g02025.1 69 APKRSSNKDRHTKVEGRGRRIRMPGLCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGNGTIPASALaATGSSVSQQR 151 789******************************************************************88854444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-31	74	159	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.087	75	129	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008361	Biological Process	regulation of cell size
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0000987	Molecular Function	core promoter proximal region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MVFKQTHLFM DPKGSNQTLE ELSNFLSHPN PKNINTNNSS NMGENNPVEI KDFQIGNSDK 60 DETKKQQLAP KRSSNKDRHT KVEGRGRRIR MPGLCAARIF QLTRELGHKS DGETIQWLLQ 120 QAEPSIIAAT GNGTIPASAL AATGSSVSQQ RISVSAGLQQ KMGELSGSIS SNSFCRTNWP 180 MVYGNFGRSH LASTGIWPPS TTNLATESSN YLQKITSFPG FDLPATNLNP MSFTSMLGAA 240 NPQQLPGLEL GLSQDTHIGA EPSIIAATGN GTIPASALAA TGSSVSQQRI SVSAGLQQKM 300 GELSGSISSN SFCRTNWPMV YGNFGRSHLA STGIWPPSTT NLATESSNYL QKITSFPGFD 360 LPATNLNPMS FTSMLGAANP QQLPGLELGL SQDTHIGGLN LQSLSQIYHQ MEHSRMHHSQ 420 QQQQNQHQQL SPEDDSQG

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MVFKQTHLFM DPKGSNQTLE ELSNFLSHPN PKNINTNNSS NMGENNPVEI KDFQIGNSDK  60
DETKKQQLAP KRSSNKDRHT KVEGRGRRIR MPGLCAARIF QLTRELGHKS DGETIQWLLQ  120
QAEPSIIAAT GNGTIPASAL AATGSSVSQQ RISVSAGLQQ KMGELSGSIS SNSFCRTNWP  180
MVYGNFGRSH LASTGIWPPS TTNLATESSN YLQKITSFPG FDLPATNLNP MSFTSMLGAA  240
NPQQLPGLEL GLSQDTHIGA EPSIIAATGN GTIPASALAA TGSSVSQQRI SVSAGLQQKM  300
GELSGSISSN SFCRTNWPMV YGNFGRSHLA STGIWPPSTT NLATESSNYL QKITSFPGFD  360
LPATNLNPMS FTSMLGAANP QQLPGLELGL SQDTHIGGLN LQSLSQIYHQ MEHSRMHHSQ  420
QQQQNQHQQL SPEDDSQG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00636	PBM	Transfer from Glyma.19G095300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757310.1	1e-161	PREDICTED: transcription factor TCP20 isoform X2
Swissprot	Q9LSD5	2e-59	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A1U7V6F6	1e-160	A0A1U7V6F6_NICSY; transcription factor TCP20 isoform X2
STRING	XP_009757309.1	1e-160	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-61	TCP family protein

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]