PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02210g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 471aa    MW: 51851.1 Da    PI: 6.7594
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02210g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.5e-071049437
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                              r C+ ++++ + l+C+ ++  lC  C ++ H+       H
  Niben101Scf02210g03007.1 10 RPCDFCNQQIAVLYCQADSAKLCLFCDQHVHSAnalskkH 49
                              78***************************99545555555 PP
2zf-B_box25.13.6e-085293342
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvvpl 42
                               ++C++++++++++ C +++  lC++C    H +  H+++p+
  Niben101Scf02210g03007.1 52 SQICDNCGSEPVSIRCATDNLVLCQECDWDAHGScaHDRTPV 93
                              579**************************99*5599998875 PP
3CCT64.14.2e-22423466144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  Niben101Scf02210g03007.1 423 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 466
                               7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.5E-11754IPR000315B-box-type zinc finger
PROSITE profilePS501199.286754IPR000315B-box-type zinc finger
CDDcd000211.88E-71042No hitNo description
PROSITE profilePS501199.5995093IPR000315B-box-type zinc finger
PfamPF006431.3E-55392IPR000315B-box-type zinc finger
CDDcd000211.72E-75493No hitNo description
SMARTSM003361.55593IPR000315B-box-type zinc finger
PROSITE profilePS5101714.912423465IPR010402CCT domain
PfamPF062031.8E-16423465IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSQRSTGDSR PCDFCNQQIA VLYCQADSAK LCLFCDQHVH SANALSKKHI RSQICDNCGS  60
EPVSIRCATD NLVLCQECDW DAHGSCAHDR TPVEGFSGCP CASELASAWG LDIEAKKPST  120
PTHLQLTWND FLEPCNWICK DVIPPPSSVL LQDLMVPNAN INSGIYSTTR EVGRKENPTS  180
GKQKQVILKQ LIELFKRDLS EVGGGSGDLV PKTPNGSSDW QGNVNVTEGN DAVMGDVNQQ  240
LERQSVPFTS LLMMQKPHNS KDSDHMVQGN ILSSGNSNVQ NTQIWDFNLG QLRSHEQSSS  300
VEADYSESDM AYMMKSYGEL IKGTSLATSK GLELSGINCS LAHEDMTAFT NNSNNRGGSQ  360
GPATSESYNL PTIKLSSDSG HAKRKCCGVS KDLNFMEQCI FVGGESTGEE ILKADMELLA  420
QNRGNAMQRY KEKKKTRRYD KHIRYESRKA RADTRKRVKG RFVKANEAPD G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799598.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
RefseqXP_016500065.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1S4CFW60.0A0A1S4CFW6_TOBAC; zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1U7Y9130.0A0A1U7Y913_NICSY; zinc finger protein CONSTANS-LIKE 14-like
STRINGXP_009799598.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.15e-98B-box type zinc finger protein with CCT domain