PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02216g02019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 410aa MW: 45061.3 Da PI: 7.1812

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02216g02019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.4e-12	338	383	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P+ +k + a++L +Av+YIk+Lq Niben101Scf02216g02019.1 338 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 383 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.57	332	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-16	335	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-12	336	387	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.6E-15	337	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-9	338	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-13	338	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MFSSTEPISR EMDKFNSFLF ASGGGGSSNF KNGGELQGME NEFLRNKEIM SSDYFQQQSS 60 QFHQQQSNNN GGGLTRYRSA PSSFFAGILE GDGNNSGENF ITHDGSSSSD SESVFTALLN 120 NNNDNNNNVN HNNNVTVSGT RDLNDQINKN QLQFASSSMK QEIGEEIKFA SSAMGSYGIG 180 VQMQSGVRLS NVNAGGSNNL IRQSSSPAGF FNGFDITREV GNYRASSGAN MSFSSAQSST 240 SNFMPIIAEN ESWNDSSSFH SLKRNGDGDL KVFSNDFNGM TSQNGESRNY TTSGLTHHLS 300 LPKTSSEMAA IEKYLQFQQD SVPCKIRAKR GCATHPRSIA ERMRRTRISE RMKKLQDLFP 360 NMDKQTNTAD MLDLAVDYIK DLQKQVQTLT DKKAKCSCPS KQLQYSNGTA

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MFSSTEPISR EMDKFNSFLF ASGGGGSSNF KNGGELQGME NEFLRNKEIM SSDYFQQQSS  60
QFHQQQSNNN GGGLTRYRSA PSSFFAGILE GDGNNSGENF ITHDGSSSSD SESVFTALLN  120
NNNDNNNNVN HNNNVTVSGT RDLNDQINKN QLQFASSSMK QEIGEEIKFA SSAMGSYGIG  180
VQMQSGVRLS NVNAGGSNNL IRQSSSPAGF FNGFDITREV GNYRASSGAN MSFSSAQSST  240
SNFMPIIAEN ESWNDSSSFH SLKRNGDGDL KVFSNDFNGM TSQNGESRNY TTSGLTHHLS  300
LPKTSSEMAA IEKYLQFQQD SVPCKIRAKR GCATHPRSIA ERMRRTRISE RMKKLQDLFP  360
NMDKQTNTAD MLDLAVDYIK DLQKQVQTLT DKKAKCSCPS KQLQYSNGTA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009757642.1	0.0	PREDICTED: transcription factor bHLH130-like
TrEMBL	A0A1U7UNB4	0.0	A0A1U7UNB4_NICSY; transcription factor bHLH130-like
STRING	XP_009757642.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	2e-63	bHLH family protein