PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02220g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 195aa MW: 20976.5 Da PI: 8.4066

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02220g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.8e-39	23	82	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s Niben101Scf02220g00002.1 23 SEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 82 67899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	19	80	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-33	25	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MPSDVSERKA TKQQQGGAPA PESEHLPCPR CDSTNTKFCY YNNYNFSQPR HFCKSCRRYW 60 THGGTLRDIP VGGGSRKNAK RSRTITTNNT SSSTSSCLSS TLSPLDYHHA PTPSHVSPFL 120 VPLTADHHGG PLPFDVKPNG NMCGSFTSLL SNTQGPHGLL ALSGFGLGVG PAIEDMGFGL 180 EAPMAISWSS LSYQC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019243787.1	1e-116	PREDICTED: dof zinc finger protein DOF3.4-like isoform X1
Refseq	XP_019243796.1	1e-116	PREDICTED: dof zinc finger protein DOF3.4-like isoform X2
TrEMBL	A0A1J6JLD5	1e-115	A0A1J6JLD5_NICAT; Dof zinc finger protein dof3.4
STRING	XP_009779886.1	1e-114	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	4e-38	Dof family protein