PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02243g03001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 252aa MW: 29048.3 Da PI: 4.8892

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02243g03001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.5	9e-35	11	126	1	116
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF P+deelv +yL kk+++++ +l+ ++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat+sgyWka Niben101Scf02243g03001.1 11 LPPGFRFYPSDEELVFHYLFKKIANED-SLKGTLVEIDLHTCEPWQLPEVAKLNSSEWYFFSFRDRKYATGFRTNRATTSGYWKA 94 79********************999.45478***********87788899************************* PP NAM 86 tgkdkevlskkgel.vglkktLvfykgrapkg 116 tgkd++vl+ ++++ vf+k++a+++ Niben101Scf02243g03001.1 95 TGKDRTVLDPRTRTtEDWVLCRVFHKAKAENS 126 ******974443233344447777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-40	9	120	IPR003441	NAC domain
PROSITE profile	PS51005	34.81	11	163	IPR003441	NAC domain
Pfam	PF02365	5.5E-16	12	105	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MMGLRDIGAT LPPGFRFYPS DEELVFHYLF KKIANEDSLK GTLVEIDLHT CEPWQLPEVA 60 KLNSSEWYFF SFRDRKYATG FRTNRATTSG YWKATGKDRT VLDPRTRTTE DWVLCRVFHK 120 AKAENSSNNN ILSPQNAYEV GVVSSPNNNN MDQSHALPYD CYRPNMAAAA VSQRPFHQRQ 180 KLFDLMEADN NQTIYPQLSQ EMTKAPSNDQ IAEDEYGFLL DMNFEDPSLQ DRGVHSSIED 240 MRFDNDNSLV FI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-30	10	132	16	136	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-30	10	132	16	136	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-30	10	132	16	136	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-30	10	132	16	136	NO APICAL MERISTEM PROTEIN
3swm_A	3e-30	10	132	19	139	NAC domain-containing protein 19
3swm_B	3e-30	10	132	19	139	NAC domain-containing protein 19
3swm_C	3e-30	10	132	19	139	NAC domain-containing protein 19
3swm_D	3e-30	10	132	19	139	NAC domain-containing protein 19
3swp_A	3e-30	10	132	19	139	NAC domain-containing protein 19
3swp_B	3e-30	10	132	19	139	NAC domain-containing protein 19
3swp_C	3e-30	10	132	19	139	NAC domain-containing protein 19
3swp_D	3e-30	10	132	19	139	NAC domain-containing protein 19
4dul_A	2e-30	10	132	16	136	NAC domain-containing protein 19
4dul_B	2e-30	10	132	16	136	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800923.1	1e-168	PREDICTED: NAC domain-containing protein 21/22-like
Refseq	XP_016469611.1	1e-168	PREDICTED: NAC domain-containing protein 21/22-like
Refseq	XP_019231599.1	1e-168	PREDICTED: NAC domain-containing protein 21/22-like
TrEMBL	A0A1S3ZZ69	1e-167	A0A1S3ZZ69_TOBAC; NAC domain-containing protein 21/22-like
TrEMBL	A0A1U7YCR1	1e-167	A0A1U7YCR1_NICSY; NAC domain-containing protein 21/22-like
TrEMBL	A0A314KGY1	1e-167	A0A314KGY1_NICAT; Nac domain-containing protein 2122
STRING	XP_009800923.1	1e-168	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.2	2e-66	NAC domain containing protein 74