PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02253g09003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 240aa MW: 27092.7 Da PI: 6.8821

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02253g09003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.3	5.1e-38	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+l++l++++ + da++s+++e++++ r PvyG+v+ i +l+ Niben101Scf02253g09003.1 10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILRQLDDDDqKADAVKSIIFESDMWERFPVYGCVEYICHLR 94 7**********************************************655549************************** PP DUF260 85 qqleqlkaelallkee 100 qql+ + +el+++ ++ Niben101Scf02253g09003.1 95 QQLQLALEELHYVYAQ 110 *******9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.017	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-37	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILRQLDD 60 DDQKADAVKS IIFESDMWER FPVYGCVEYI CHLRQQLQLA LEELHYVYAQ LALHKEQQQQ 120 QLALQCGVIS KIPFVNGISM GPFSTSEGES SEGGQKTNLL GSHSLFDHTN SITFPASDHA 180 IFGFGVRDDQ RDISHEYECL ITPFNNIMAD DRQSYVGTKE ASPNHLGRIH NHSRICLRMS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-24	2	133	4	123	LOB family transfactor Ramosa2.1
5ly0_B	2e-24	2	133	4	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016434883.1	1e-148	PREDICTED: LOB domain-containing protein 2-like
TrEMBL	A0A1S3X592	1e-147	A0A1S3X592_TOBAC; LOB domain-containing protein 2-like
STRING	XP_009768780.1	1e-142	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-36	LOB domain-containing protein 27