PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02272g03001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 324aa MW: 34874.6 Da PI: 8.4988

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02272g03001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.9	4.3e-39	41	171	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++ ++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ Niben101Scf02272g03001.1 41 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSEGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSVRSSGTTISAP 125 899***************************************************************9997666666666633333 PP TCP 89 .............................................k 89 + Niben101Scf02272g03001.1 126 psksaplfihggpttmlgfhhplsntsfgqdpdenymkkryredtS 171 5555667777777777776666666666654444444333333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.4E-37	44	195	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.071	44	98	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MEFREPNSKN QGGSTSRSDH PNDNKSDNNN NNLVISTKVV KKPSKDRHTK VDGRGRRIRM 60 PALCAARVFQ LTKELGHKSE GETIEWLLQQ AEPSIIAATG TGTIPANFST LNVSVRSSGT 120 TISAPPSKSA PLFIHGGPTT MLGFHHPLSN TSFGQDPDEN YMKKRYREDT SGATSPPSAT 180 KPEKTGGQAH EPDQESKPGS SHASSYIPAP AMWAVAPASG NVGNTFWMVP STSSTMQRIG 240 GFEFPGGGRF SPVQLGSMFL QQPQPVQQLG LGVLETNLGM LASMNAYNIR GTGIDLGMNL 300 EQHQHHNQQQ GSDSGDENHK DSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240624.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	3e-67	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1J6K4U8	0.0	A0A1J6K4U8_NICAT; Transcription factor tcp8
STRING	XP_009803421.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	3e-60	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]