PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02275g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 537aa    MW: 58685.6 Da    PI: 6.6924
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02275g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31e-10168209546
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                               k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  Niben101Scf02275g01001.1 168 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQ 209
                               7789************************99888888877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-8164227IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358166210IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-6168211No hitNo description
PfamPF001709.2E-8168209IPR004827Basic-leucine zipper domain
CDDcd147083.90E-21168219No hitNo description
Gene3DG3DSA:1.20.5.1708.4E-8169213No hitNo description
PROSITE patternPS000360171186IPR004827Basic-leucine zipper domain
PfamPF141449.0E-33250325IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MASKIGTAGN RSGTTGMPSF ISQISVSNPM GTEANNTNTS RMSDFGVLEQ YLGFRIGDGA  60
NVNRSPLFNS TSATNPAVGF EVSGTINRTL APSNTSLPTA TPRSQTMLLQ SNLVSASGNH  120
HENWGESNMA DSGSRTDTST DMDGDDKNQR IEAGQSSDKS KEKVLDQKTL RRLAQNREAA  180
RKSRLRKKAY VQQLENSRLK LSQLEQDLQR ARQQGKYISN IADQPNGVGA NGPLAFDAEY  240
SRWLEEHNKH INELRTAVNA HASDPELRSI VNNVTTHFDE VFRVKGNAAK ADVFHVLSGM  300
WKTPAERCFM WIGGFRPSEL LKLLVNQLEP LTEQQLAGIF NLQQSSHQAE DALSQGMEAL  360
QQSLAETLAN GSPAPEGSSG DVANYMGQMA MAMGKLGTLE GFLRQLLVNQ LEPLTEQQLA  420
GIFNLQQSSH QAEDALSQGM EALQQSLAET LANGSPAPEG SSGDVANYMG QMAMAMGKLG  480
TLEGFLRQAD NLRQQTLQQM HRVLTTRQSA RALLAINEYF SRLRALSSLW LARPREQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312268.10.0TGACG-sequence-specific DNA-binding protein TGA-2.1
RefseqXP_009759888.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A1S3Z3860.0A0A1S3Z386_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A1U7V0F80.0A0A1U7V0F8_NICSY; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRINGXP_009759888.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-136TGACG motif-binding factor 6