PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02283g00017.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 181aa MW: 21021.2 Da PI: 7.4189

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02283g00017.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.4	2.6e-13	81	161	14	80
T-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 14 grlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 +rl +p +f +e + ++ +s++++++d++g+ ++k++ +++ +r+vl kGW++ v+an+L+ gD+v Niben101Scf02283g00017.1 81 SRLLIPGTFDKELlknlseeeriklvdNDDTDKSFEVKVMDQEGNFHKMKFTRWQSLNRFVLNKGWNNLVEANNLQKGDTV 161 678888888777787777777777777556669*********999999999************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03754	1.2E-10	64	151	IPR005508	B3 domain-containing protein
PROSITE profile	PS50863	10.489	68	181	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.8E-14	72	168	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.83E-16	74	169	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.88E-14	107	176	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MTRIKLFGKE IEVEEEPKTI KLFGARIYPC NVEKQQEQEA ALQENLPPTN MCQAIRLAGG 60 SGLVYIGRKK AEESDIKPDL SRLLIPGTFD KELLKNLSEE ERIKLVDNDD TDKSFEVKVM 120 DQEGNFHKMK FTRWQSLNRF VLNKGWNNLV EANNLQKGDT VDLWHFRIDL KLRFAINIIK 180 N

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774698.1	1e-116	PREDICTED: putative B3 domain-containing protein At3g49610
Refseq	XP_016495804.1	1e-116	PREDICTED: putative B3 domain-containing protein At3g49610
TrEMBL	A0A1S4C414	1e-115	A0A1S4C414_TOBAC; putative B3 domain-containing protein At3g49610
TrEMBL	A0A1U7W7U3	1e-115	A0A1U7W7U3_NICSY; putative B3 domain-containing protein At3g49610
STRING	XP_009774698.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11679	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05930.1	1e-07	B3 family protein