PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02287g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 281aa    MW: 31935.1 Da    PI: 6.0709
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02287g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-203992356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               R++f++eq++ Le +Fe +  p  +++++LAk+lgL+ rqV +WFqN+Ra+ k
  Niben101Scf02287g01001.1 39 MRRRFNDEQIRSLEHMFETEARPELRTKQQLAKSLGLQPRQVAIWFQNKRARSK 92
                              699*************************************************99 PP
2HD-ZIP_I/II97.81e-3140116379
               HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 
                               +rr+++eq+++LE++Fe+e + e + K++la++Lglqprqva+WFqn+RAR k+kqlE++y++Lk +yd+l +++ +
  Niben101Scf02287g01001.1  40 RRRFNDEQIRSLEHMFETEARPELRTKQQLAKSLGLQPRQVAIWFQNKRARSKSKQLEMEYRMLKISYDNLGSNKLT 116
                               79********************************************************************9887644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.42E-182496IPR009057Homeodomain-like
PROSITE profilePS5007117.5563494IPR001356Homeobox domain
SMARTSM003891.9E-173698IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-1839101IPR009057Homeodomain-like
PfamPF000461.9E-173992IPR001356Homeobox domain
CDDcd000861.49E-164095No hitNo description
PRINTSPR000319.0E-66574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000319.0E-67490IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSVGERLPTN SNMWSQSSLL GKDLNLHSMS SIKNCKDNMR RRFNDEQIRS LEHMFETEAR  60
PELRTKQQLA KSLGLQPRQV AIWFQNKRAR SKSKQLEMEY RMLKISYDNL GSNKLTEKGG  120
NEEIKTEGDK LETEVIKSEF IPETCSPEFG LPLCEDNREV DYLGPESDIL NMAQIADGLS  180
EIENECNFES RTFFDDSACR SPFFSISSHQ PTLSIYPNSM EAKRNAILVH GRAKQKLDST  240
WTLGKFKGSR GIAANHVRLN PVDSASVVIL VITPDPWVAD E
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796883.11e-136PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A1U7Y1761e-135A0A1U7Y176_NICSY; homeobox-leucine zipper protein ATHB-12-like
STRINGXP_009796883.11e-136(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-29homeobox 7